Plot ic fit objects

Provides methods to plot estimated time trends of vaccine coverage for countries.

ic_plot(
  X,
  probs = c(0.025, 0.975),
  vaccine,
  observed = TRUE,
  prediction = TRUE,
  wuenic = FALSE,
  filter_yovi = FALSE,
  ncol = 4,
  interactive = FALSE
)

# S3 method for icfit
ic_plot(
  X,
  probs = c(0.025, 0.975),
  vaccine,
  observed = TRUE,
  prediction = TRUE,
  wuenic = FALSE,
  filter_yovi = FALSE,
  ncol = 4,
  interactive = FALSE
)

# S3 method for iclist
ic_plot(
  X,
  probs = c(0.025, 0.975),
  vaccine,
  observed = TRUE,
  prediction = TRUE,
  filter_yovi = FALSE,
  ncol = 4,
  interactive = FALSE
)

Arguments

X	Object of type icfit or iclist
probs	Numeric vector of length 2 for probabilities with values in 0,1 to be used to calculate the upper and lower credible intervals.
vaccine	Optional. Character vector to subset which vaccines to plot
observed	Logical. Should the observed data used to fit X be overlaid on the plot? Default is TRUE.
prediction	Logical. If predictions are found in the icfit object, should they be overlaid on the plot? Default is TRUE.
wuenic	Logical. Should WUENIC vaccination coverage estimates be overlaid on the plot? Default is FALSE.
filter_yovi	Logical. Should the estimates be filtered by year of vaccine introduction? Default is FALSE.
ncol	When plotting multiple countries, the number of plots per page.
interactive	Logical. Should the output be interactive? Default is FALSE.

Value

A plot of the coverage estimates extracted from the fit, including credible intervals.

Details

If observed data are provided, they will be overlaid on the estimates.